miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Lactuca virosa



ABOUT THIS RECORD

ID: MNEST001354
species: Lactuca virosa
miRNA family: MIR477
source: miRNEST

Taxonomy by NCBI:
Lactuca virosa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTCTCCCTCAAGGGCTTCTAA

miRNA*
AGAAGCTTCTTGATGGAGAATA

mismatches: 2
bulges: 1

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pre-miRNA
TTTAAAAGGCAATGATTGTTTGTTCTCCCTCAAGGGCTTCTAATGTTGGTTGTATGATGCCCTTAATTTCAAGTGTATGTCTAGGATCATATAAGAAGCT
TCTTGATGGAGAATA
AAATTTCATTGTCTTTATT


dot-bracket secondary structure
....(((((((((((...((((((((((.((((((((((((.((((.((((.((..((((.(((......))).))))...)).)))))))).)))))).
)))))).))))))))
))...)))))))))))...



SIMILARITIES
miRBase aqc-MIR477g: 0.00003

PMRD aqc-miR477g: 0.00003

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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